IL_8VVT_249

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCU*ACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVT_249 not in the Motif Atlas

Geometric match to IL_4E48_003

Geometric discrepancy: 0.0944

The information below is about IL_4E48_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

8VVT|1|ZA|C|1739
8VVT|1|ZA|C|1740
8VVT|1|ZA|U|1741
*
8VVT|1|ZA|A|1793
8VVT|1|ZA|C|1794
8VVT|1|ZA|G|1795

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain GB

S6

Chain IB

eS8

Chain V

L24