IL_8VVT_250

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGGAU*AGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVT_250 not in the Motif Atlas

Geometric match to IL_8CRE_476

Geometric discrepancy: 0.1799

The information below is about IL_8CRE_476

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

24

Unit IDs

8VVT|1|ZA|C|1742
8VVT|1|ZA|G|1743
8VVT|1|ZA|G|1744
8VVT|1|ZA|A|1745
8VVT|1|ZA|U|1746
*
8VVT|1|ZA|A|1788
8VVT|1|ZA|G|1789
8VVT|1|ZA|A|1790
8VVT|1|ZA|A|1791
8VVT|1|ZA|G|1792

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain GB

S6

Chain IB

eS8

Chain V

L24