IL_8VVU_021

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAC*GC

Length

5 nucleotides

Bulged bases

8VVU|1|WA|A|349

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVU_021 not in the Motif Atlas

Geometric match to IL_8CRE_014

Geometric discrepancy: 0.1858

The information below is about IL_8CRE_014

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

8VVU|1|WA|G|348
8VVU|1|WA|A|349
8VVU|1|WA|C|350
*
8VVU|1|YA|G|25
8VVU|1|YA|C|26

Current chains

Chain WA

28S rRNA

Chain YA

5.8S rRNA

Nearby chains

Chain C

uL4

Chain X

L26