IL_8VVU_061

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

8VVU|1|WA|U|1593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVU_061 not in the Motif Atlas

Geometric match to IL_8CRE_035

Geometric discrepancy: 0.1897

The information below is about IL_8CRE_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

8VVU|1|WA|C|1592
8VVU|1|WA|U|1593
8VVU|1|WA|G|1594
*
8VVU|1|WA|C|1605
8VVU|1|WA|G|1606

Current chains

Chain WA

28S rRNA

Nearby chains

Chain B

uL3

Chain IA

L37