IL_8VVU_062
3D structure
- PDB id
- 8VVU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GGG*UAAUC
- Length
- 8 nucleotides
- Bulged bases
- 8VVU|1|WA|G|1627, 8VVU|1|WA|A|1639, 8VVU|1|WA|A|1640, 8VVU|1|WA|U|1641
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VVU_062 not in the Motif Atlas
- Geometric match to IL_8CRE_036
- Geometric discrepancy: 0.0818
- The information below is about IL_8CRE_036
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_06549.2
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
8VVU|1|WA|G|1626
8VVU|1|WA|G|1627
8VVU|1|WA|G|1628
*
8VVU|1|WA|U|1638
8VVU|1|WA|A|1639
8VVU|1|WA|A|1640
8VVU|1|WA|U|1641
8VVU|1|WA|C|1642
Current chains
- Chain WA
- 28S rRNA
Nearby chains
- Chain A
- uL2
- Chain IA
- L37
- Chain M
- L15
- Chain O
- uL22
Coloring options: