IL_8VVU_080
3D structure
- PDB id
- 8VVU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CUCAUCAG*CUGGAG
- Length
- 14 nucleotides
- Bulged bases
- 8VVU|1|WA|U|1932, 8VVU|1|WA|C|1933, 8VVU|1|WA|G|2057, 8VVU|1|WA|A|2059
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VVU_080 not in the Motif Atlas
- Geometric match to IL_8CRE_054
- Geometric discrepancy: 0.1687
- The information below is about IL_8CRE_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_77278.1
- Basepair signature
- cWW-tWW-L-tWW-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8VVU|1|WA|C|1928
8VVU|1|WA|U|1929
8VVU|1|WA|C|1930
8VVU|1|WA|A|1931
8VVU|1|WA|U|1932
8VVU|1|WA|C|1933
8VVU|1|WA|A|1934
8VVU|1|WA|G|1935
*
8VVU|1|WA|C|2055
8VVU|1|WA|U|2056
8VVU|1|WA|G|2057
8VVU|1|WA|G|2058
8VVU|1|WA|A|2059
8VVU|1|WA|G|2060
Current chains
- Chain WA
- 28S rRNA
Nearby chains
- Chain H
- L9
- Chain L
- eL14
- Chain LA
- eL40
- Chain N
- uL13
- Chain R
- L18A
Coloring options: