IL_8VVU_085

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

8VVU|1|WA|A|2004

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVU_085 not in the Motif Atlas

Geometric match to IL_8CRE_059

Geometric discrepancy: 0.1984

The information below is about IL_8CRE_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

8VVU|1|WA|G|2003
8VVU|1|WA|A|2004
8VVU|1|WA|G|2005
8VVU|1|WA|U|2006
8VVU|1|WA|G|2007
*
8VVU|1|WA|C|2016
8VVU|1|WA|U|2017
8VVU|1|WA|C|2018

Current chains

Chain WA

28S rRNA

Nearby chains

Chain RA

L12