IL_8VVU_088
3D structure
- PDB id
- 8VVU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GAG*CC
- Length
- 5 nucleotides
- Bulged bases
- 8VVU|1|WA|A|2302
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VVU_088 not in the Motif Atlas
- Geometric match to IL_3OXE_001
- Geometric discrepancy: 0.2629
- The information below is about IL_3OXE_001
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_14190.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 134
Unit IDs
8VVU|1|WA|G|2301
8VVU|1|WA|A|2302
8VVU|1|WA|G|2303
*
8VVU|1|WA|C|2336
8VVU|1|WA|C|2337
Current chains
- Chain WA
- 28S rRNA
Nearby chains
- Chain C
- uL4
- Chain DA
- L32
- Chain PA
- L28
- Chain YA
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: