IL_8VVU_091

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVU_091 not in the Motif Atlas

Geometric match to IL_8CRE_065

Geometric discrepancy: 0.1077

The information below is about IL_8CRE_065

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

8VVU|1|WA|G|2360
8VVU|1|WA|U|2361
8VVU|1|WA|A|2362
8VVU|1|WA|G|2363
8VVU|1|WA|U|2364
8VVU|1|WA|A|2365
8VVU|1|WA|G|2366
*
8VVU|1|WA|C|3860
8VVU|1|WA|G|3861
8VVU|1|WA|A|3862
8VVU|1|WA|A|3863
8VVU|1|WA|A|3864
8VVU|1|WA|C|3865

Current chains

Chain WA

28S rRNA

Nearby chains

Chain C

uL4

Chain O

uL22

Chain YA

5.8S ribosomal RNA; 5.8S rRNA