IL_8VVU_092

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGAAC*GAA

Length

8 nucleotides

Bulged bases

8VVU|1|WA|A|2430

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVU_092 not in the Motif Atlas

Geometric match to IL_4MGN_001

Geometric discrepancy: 0.3552

The information below is about IL_4MGN_001

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.12

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

22

Unit IDs

8VVU|1|WA|U|2417
8VVU|1|WA|G|2418
8VVU|1|WA|A|2419
8VVU|1|WA|A|2420
8VVU|1|WA|C|2421
*
8VVU|1|WA|G|2429
8VVU|1|WA|A|2430
8VVU|1|WA|A|2431

Current chains

Chain WA

28S rRNA

Nearby chains

Chain KA

eL39

Chain O

uL22

Chain Q

eL19