IL_8VVU_095

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGG*CC

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVU_095 not in the Motif Atlas

Geometric match to IL_4LFB_041

Geometric discrepancy: 0.3011

The information below is about IL_4LFB_041

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

8VVU|1|WA|G|2481
8VVU|1|WA|G|2482
8VVU|1|WA|G|2483
*
8VVU|1|WA|C|2500
8VVU|1|WA|C|2501

Current chains

Chain WA

28S rRNA

Nearby chains

Chain W

uL23

Chain YA

5.8S ribosomal RNA; 5.8S rRNA