IL_8VVU_104
3D structure
- PDB id
- 8VVU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UGGAAUG*CGAGAGA
- Length
- 14 nucleotides
- Bulged bases
- 8VVU|1|WA|U|2663, 8VVU|1|WA|A|2676
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VVU_104 not in the Motif Atlas
- Geometric match to IL_8P9A_301
- Geometric discrepancy: 0.2092
- The information below is about IL_8P9A_301
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_93476.1
- Basepair signature
- cWW-tSH-L-R-tSS-tHS-L-R-cWW
- Number of instances in this motif group
- 6
Unit IDs
8VVU|1|WA|U|2658
8VVU|1|WA|G|2659
8VVU|1|WA|G|2660
8VVU|1|WA|A|2661
8VVU|1|WA|A|2662
8VVU|1|WA|U|2663
8VVU|1|WA|G|2664
*
8VVU|1|WA|C|2674
8VVU|1|WA|G|2675
8VVU|1|WA|A|2676
8VVU|1|WA|G|2677
8VVU|1|WA|A|2678
8VVU|1|WA|G|2679
8VVU|1|WA|A|2680
Current chains
- Chain WA
- 28S rRNA
Nearby chains
- Chain BA
- eL30
- Chain FA
- L34
- Chain NB
- uS15
- Chain OA
- eL43
- Chain Q
- eL19
- Chain Y
- L27
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