IL_8VVU_107

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AAG*CCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVU_107 not in the Motif Atlas

Geometric match to IL_8P9A_303

Geometric discrepancy: 0.1538

The information below is about IL_8P9A_303

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10432.1

Basepair signature

cWW-tWW-cWW

Number of instances in this motif group

10

Unit IDs

8VVU|1|WA|A|2846
8VVU|1|WA|A|2847
8VVU|1|WA|G|2848
*
8VVU|1|WA|C|3844
8VVU|1|WA|C|3845
8VVU|1|WA|U|3846

Current chains

Chain WA

28S rRNA

Nearby chains

Chain B

uL3

Chain U

L23

Chain V

uL24