IL_8VVU_115
3D structure
- PDB id
- 8VVU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CGAAGG*UGUUGACG
- Length
- 14 nucleotides
- Bulged bases
- 8VVU|1|WA|A|3665, 8VVU|1|WA|U|3681, 8VVU|1|WA|C|3685
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VVU_115 not in the Motif Atlas
- Geometric match to IL_8CRE_088
- Geometric discrepancy: 0.0907
- The information below is about IL_8CRE_088
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_20047.1
- Basepair signature
- cWW-tSH-tWH-cSH-cHW-cWH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
8VVU|1|WA|C|3662
8VVU|1|WA|G|3663
8VVU|1|WA|A|3664
8VVU|1|WA|A|3665
8VVU|1|WA|G|3666
8VVU|1|WA|G|3667
*
8VVU|1|WA|U|3679
8VVU|1|WA|G|3680
8VVU|1|WA|U|3681
8VVU|1|WA|U|3682
8VVU|1|WA|G|3683
8VVU|1|WA|A|3684
8VVU|1|WA|C|3685
8VVU|1|WA|G|3686
Current chains
- Chain WA
- 28S rRNA
Nearby chains
- Chain A
- uL2
- Chain OA
- eL43
- Chain ZA
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: