IL_8VVU_122
3D structure
- PDB id
- 8VVU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CCAAAUGCCUCG*CGCG
- Length
- 16 nucleotides
- Bulged bases
- 8VVU|1|WA|A|3787, 8VVU|1|WA|C|3793, 8VVU|1|WA|C|3812
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VVU_122 not in the Motif Atlas
- Geometric match to IL_8CRE_095
- Geometric discrepancy: 0.2028
- The information below is about IL_8CRE_095
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_42218.2
- Basepair signature
- cWW-L-R-cHW-cWW-L-L-L-R-L
- Number of instances in this motif group
- 5
Unit IDs
8VVU|1|WA|C|3783
8VVU|1|WA|C|3784
8VVU|1|WA|A|3785
8VVU|1|WA|A|3786
8VVU|1|WA|A|3787
8VVU|1|WA|U|3788
8VVU|1|WA|G|3789
8VVU|1|WA|C|3790
8VVU|1|WA|C|3791
8VVU|1|WA|U|3792
8VVU|1|WA|C|3793
8VVU|1|WA|G|3794
*
8VVU|1|WA|C|3810
8VVU|1|WA|G|3811
8VVU|1|WA|C|3812
8VVU|1|WA|G|3813
Current chains
- Chain WA
- 28S rRNA
Nearby chains
- Chain At
- Transfer RNA; tRNA
- Chain MA
- eL41
- Chain ZA
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: