IL_8VVU_139

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVU_139 not in the Motif Atlas

Geometric match to IL_8P9A_333

Geometric discrepancy: 0.1713

The information below is about IL_8P9A_333

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

8VVU|1|WA|C|4414
8VVU|1|WA|C|4415
8VVU|1|WA|A|4416
8VVU|1|WA|A|4417
8VVU|1|WA|G|4418
*
8VVU|1|WA|C|4428
8VVU|1|WA|G|4429
8VVU|1|WA|A|4430
8VVU|1|WA|C|4431
8VVU|1|WA|G|4432

Current chains

Chain WA

28S rRNA

Nearby chains

Chain At

Transfer RNA; tRNA

Chain I

L10

Chain LA

eL40