IL_8VVU_154

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UU*AAUG

Length

6 nucleotides

Bulged bases

8VVU|1|WA|A|4658, 8VVU|1|WA|U|4659

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVU_154 not in the Motif Atlas

Geometric match to IL_5J7L_349

Geometric discrepancy: 0.2095

The information below is about IL_5J7L_349

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

8VVU|1|WA|U|4643
8VVU|1|WA|U|4644
*
8VVU|1|WA|A|4657
8VVU|1|WA|A|4658
8VVU|1|WA|U|4659
8VVU|1|WA|G|4660

Current chains

Chain WA

28S rRNA

Nearby chains

Chain CA

L31

Chain Q

eL19