IL_8VVU_159

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCUCGGAUAGCC*GGUGCGGAGAG

Length

23 nucleotides

Bulged bases

8VVU|1|WA|C|4759, 8VVU|1|WA|U|4760, 8VVU|1|WA|A|4766, 8VVU|1|WA|G|4872, 8VVU|1|WA|C|4873, 8VVU|1|WA|G|4875, 8VVU|1|WA|A|4878

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVU|1|WA|C|4758
8VVU|1|WA|C|4759
8VVU|1|WA|U|4760
8VVU|1|WA|C|4761
8VVU|1|WA|G|4762
8VVU|1|WA|G|4763
8VVU|1|WA|A|4764
8VVU|1|WA|U|4765
8VVU|1|WA|A|4766
8VVU|1|WA|G|4767
8VVU|1|WA|C|4768
8VVU|1|WA|C|4769
*
8VVU|1|WA|G|4869
8VVU|1|WA|G|4870
8VVU|1|WA|U|4871
8VVU|1|WA|G|4872
8VVU|1|WA|C|4873
8VVU|1|WA|G|4874
8VVU|1|WA|G|4875
8VVU|1|WA|A|4876
8VVU|1|WA|G|4877
8VVU|1|WA|A|4878
8VVU|1|WA|G|4879

Current chains

Chain WA

28S rRNA

Nearby chains

Chain E

L6

Chain H

L9

Chain L

eL14

Chain N

uL13

Chain R

L18A