IL_8VVU_171

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AGAG*CGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVU_171 not in the Motif Atlas

Geometric match to IL_8CRE_141

Geometric discrepancy: 0.2189

The information below is about IL_8CRE_141

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

8VVU|1|WA|A|5016
8VVU|1|WA|G|5017
8VVU|1|WA|A|5018
8VVU|1|WA|G|5019
*
8VVU|1|WA|C|5034
8VVU|1|WA|G|5035
8VVU|1|WA|A|5036
8VVU|1|WA|U|5037

Current chains

Chain WA

28S rRNA

Nearby chains

Chain IB

S8

Chain Q

eL19