IL_8VVU_182

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAAA*UGACG

Length

9 nucleotides

Bulged bases

8VVU|1|ZA|A|516

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVU_182 not in the Motif Atlas

Geometric match to IL_8T29_001

Geometric discrepancy: 0.3431

The information below is about IL_8T29_001

Detailed Annotation

Double sheared; A in syn

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

8VVU|1|ZA|C|37
8VVU|1|ZA|A|38
8VVU|1|ZA|A|39
8VVU|1|ZA|A|40
*
8VVU|1|ZA|U|514
8VVU|1|ZA|G|515
8VVU|1|ZA|A|516
8VVU|1|ZA|C|517
8VVU|1|ZA|G|518

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain EB

S4

Chain JB

S9