IL_8VVU_183

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAUUAAG*CGC

Length

10 nucleotides

Bulged bases

8VVU|1|ZA|U|44, 8VVU|1|ZA|A|45, 8VVU|1|ZA|A|46

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVU_183 not in the Motif Atlas

Geometric match to IL_8CRE_393

Geometric discrepancy: 0.1627

The information below is about IL_8CRE_393

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_88082.2

Basepair signature

cWW-L-tSS-L-cWW-L

Number of instances in this motif group

3

Unit IDs

8VVU|1|ZA|G|41
8VVU|1|ZA|A|42
8VVU|1|ZA|U|43
8VVU|1|ZA|U|44
8VVU|1|ZA|A|45
8VVU|1|ZA|A|46
8VVU|1|ZA|G|47
*
8VVU|1|ZA|C|479
8VVU|1|ZA|G|480
8VVU|1|ZA|C|481

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain XB

S23