IL_8VVU_188

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UCCUUU*AUUCG

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVU_188 not in the Motif Atlas

Geometric match to IL_8CRE_399

Geometric discrepancy: 0.2901

The information below is about IL_8CRE_399

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31545.1

Basepair signature

cWW-L-R-L-cWW-cWW-cWW

Number of instances in this motif group

4

Unit IDs

8VVU|1|ZA|U|116
8VVU|1|ZA|C|117
8VVU|1|ZA|C|118
8VVU|1|ZA|U|119
8VVU|1|ZA|U|120
8VVU|1|ZA|U|121
*
8VVU|1|ZA|A|343
8VVU|1|ZA|U|344
8VVU|1|ZA|U|345
8VVU|1|ZA|C|346
8VVU|1|ZA|G|347

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain EB

S4

Chain IB

S8