IL_8VVU_191

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUGAC*GGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVU_191 not in the Motif Atlas

Geometric match to IL_5J7L_274

Geometric discrepancy: 0.2724

The information below is about IL_5J7L_274

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

8VVU|1|ZA|C|188
8VVU|1|ZA|U|189
8VVU|1|ZA|G|190
8VVU|1|ZA|A|191
8VVU|1|ZA|C|192
*
8VVU|1|ZA|G|207
8VVU|1|ZA|G|208
8VVU|1|ZA|A|209
8VVU|1|ZA|U|210
8VVU|1|ZA|G|211

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain IB

S8