IL_8VVU_202

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AU*AAU

Length

5 nucleotides

Bulged bases

8VVU|1|ZA|A|555

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVU_202 not in the Motif Atlas

Geometric match to IL_8P9A_399

Geometric discrepancy: 0.3337

The information below is about IL_8P9A_399

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

134

Unit IDs

8VVU|1|ZA|A|529
8VVU|1|ZA|U|530
*
8VVU|1|ZA|A|554
8VVU|1|ZA|A|555
8VVU|1|ZA|U|556

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain EC

S30

Chain JB

S9