IL_8VVU_220

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGGCC*GAAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVU_220 not in the Motif Atlas

Geometric match to IL_8D29_010

Geometric discrepancy: 0.2892

The information below is about IL_8D29_010

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_71154.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

8VVU|1|ZA|C|927
8VVU|1|ZA|G|928
8VVU|1|ZA|G|929
8VVU|1|ZA|C|930
8VVU|1|ZA|C|931
*
8VVU|1|ZA|G|1010
8VVU|1|ZA|A|1011
8VVU|1|ZA|A|1012
8VVU|1|ZA|U|1013
8VVU|1|ZA|G|1014

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain BB

S3A

Chain BC

S27

Chain NB

uS15