IL_8VVU_231

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

8VVU|1|ZA|A|1695

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVU_231 not in the Motif Atlas

Geometric match to IL_5J7L_039

Geometric discrepancy: 0.1405

The information below is about IL_5J7L_039

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

8VVU|1|ZA|G|1203
8VVU|1|ZA|A|1204
*
8VVU|1|ZA|U|1694
8VVU|1|ZA|A|1695
8VVU|1|ZA|C|1696

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain AC

S26

Chain CB

S2-like