IL_8VVU_242

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

8VVU|1|ZA|A|1489

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVU_242 not in the Motif Atlas

Geometric match to IL_8CRE_455

Geometric discrepancy: 0.1639

The information below is about IL_8CRE_455

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

134

Unit IDs

8VVU|1|ZA|C|1337
8VVU|1|ZA|G|1338
*
8VVU|1|ZA|C|1488
8VVU|1|ZA|A|1489
8VVU|1|ZA|G|1490

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain At

Transfer RNA; tRNA

Chain CB

S2-like

Chain DB

S3

Chain DC

uS14

Chain QB

uS9

Chain UB

uS10

Chain VA

mRNA