IL_8VVU_245

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

ACUA*UUCU

Length

8 nucleotides

Bulged bases

8VVU|1|ZA|C|1403, 8VVU|1|ZA|U|1404

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVU_245 not in the Motif Atlas

Geometric match to IL_8CRE_481

Geometric discrepancy: 0.2072

The information below is about IL_8CRE_481

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_78800.2

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

3

Unit IDs

8VVU|1|ZA|A|1402
8VVU|1|ZA|C|1403
8VVU|1|ZA|U|1404
8VVU|1|ZA|A|1405
*
8VVU|1|ZA|U|1441
8VVU|1|ZA|U|1442
8VVU|1|ZA|C|1443
8VVU|1|ZA|U|1444

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain GC

RACK1

Chain QB

uS9

Chain UB

uS10