IL_8VVU_246

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UA*UCCCCCA

Length

9 nucleotides

Bulged bases

8VVU|1|ZA|C|1433, 8VVU|1|ZA|C|1434, 8VVU|1|ZA|C|1435, 8VVU|1|ZA|C|1436, 8VVU|1|ZA|C|1437

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVU_246 not in the Motif Atlas

Geometric match to IL_8P9A_381

Geometric discrepancy: 0.1995

The information below is about IL_8P9A_381

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71421.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

8VVU|1|ZA|U|1408
8VVU|1|ZA|A|1409
*
8VVU|1|ZA|U|1432
8VVU|1|ZA|C|1433
8VVU|1|ZA|C|1434
8VVU|1|ZA|C|1435
8VVU|1|ZA|C|1436
8VVU|1|ZA|C|1437
8VVU|1|ZA|A|1438

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain QB

uS9

Chain UB

uS10