IL_8VVU_253

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

8VVU|1|ZA|C|1701, 8VVU|1|ZA|A|1835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVU_253 not in the Motif Atlas

Geometric match to IL_4LFB_056

Geometric discrepancy: 0.1643

The information below is about IL_4LFB_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_18228.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

8VVU|1|ZA|C|1700
8VVU|1|ZA|C|1701
8VVU|1|ZA|G|1702
*
8VVU|1|ZA|C|1833
8VVU|1|ZA|A|1834
8VVU|1|ZA|A|1835
8VVU|1|ZA|G|1836

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain AC

S26

Chain SA

Transfer RNA; tRNA

Chain VA

mRNA