IL_8VVU_256

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGCUA*UAAAAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVU|1|ZA|C|1708
8VVU|1|ZA|G|1709
8VVU|1|ZA|C|1710
8VVU|1|ZA|U|1711
8VVU|1|ZA|A|1712
*
8VVU|1|ZA|U|1821
8VVU|1|ZA|A|1822
8VVU|1|ZA|A|1823
8VVU|1|ZA|A|1824
8VVU|1|ZA|A|1825
8VVU|1|ZA|G|1826

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain At

Transfer RNA; tRNA

Chain MA

eL41

Chain VA

mRNA

Chain WA

Large subunit ribosomal RNA; LSU rRNA

Chain XB

S23