IL_8VVU_261

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGAG*CGAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVU_261 not in the Motif Atlas

Geometric match to IL_8CRE_474

Geometric discrepancy: 0.1255

The information below is about IL_8CRE_474

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.1

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

44

Unit IDs

8VVU|1|ZA|U|1733
8VVU|1|ZA|G|1734
8VVU|1|ZA|A|1735
8VVU|1|ZA|G|1736
*
8VVU|1|ZA|C|1798
8VVU|1|ZA|G|1799
8VVU|1|ZA|A|1800
8VVU|1|ZA|A|1801

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain GB

eS6

Chain IB

S8

Chain U

L23

Chain V

uL24

Chain WA

Large subunit ribosomal RNA; LSU rRNA