IL_8VVU_263

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGGAU*AGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVU_263 not in the Motif Atlas

Geometric match to IL_9DFE_075

Geometric discrepancy: 0.1942

The information below is about IL_9DFE_075

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.1

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

22

Unit IDs

8VVU|1|ZA|C|1742
8VVU|1|ZA|G|1743
8VVU|1|ZA|G|1744
8VVU|1|ZA|A|1745
8VVU|1|ZA|U|1746
*
8VVU|1|ZA|A|1788
8VVU|1|ZA|G|1789
8VVU|1|ZA|A|1790
8VVU|1|ZA|A|1791
8VVU|1|ZA|G|1792

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain GB

eS6

Chain IB

S8

Chain V

uL24