IL_8VVV_007

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAA*UG

Length

6 nucleotides

Bulged bases

8VVV|1|5|G|119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVV_007 not in the Motif Atlas

Geometric match to IL_6XJQ_007

Geometric discrepancy: 0.3179

The information below is about IL_6XJQ_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36175.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

6

Unit IDs

8VVV|1|5|C|118
8VVV|1|5|G|119
8VVV|1|5|A|120
8VVV|1|5|A|121
*
8VVV|1|5|U|152
8VVV|1|5|G|153

Current chains

Chain 5

28S rRNA

Nearby chains

Chain G

eL8

Chain N

eL15

Chain h

uL29