IL_8VVV_018
3D structure
- PDB id
- 8VVV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian ribosomes bound to Anisomycin in the nonrotated conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUGAAAC*G(OMU)GGAUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VVV_018 not in the Motif Atlas
- Geometric match to IL_5J7L_245
- Geometric discrepancy: 0.1346
- The information below is about IL_5J7L_245
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_04021.2
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
8VVV|1|5|G|415
8VVV|1|5|U|416
8VVV|1|5|G|417
8VVV|1|5|A|418
8VVV|1|5|A|419
8VVV|1|5|A|420
8VVV|1|5|C|421
*
8VVV|1|8|G|13
8VVV|1|8|OMU|14
8VVV|1|8|G|15
8VVV|1|8|G|16
8VVV|1|8|A|17
8VVV|1|8|U|18
8VVV|1|8|C|19
Current chains
- Chain 5
- 28S rRNA
- Chain 8
- 5.8S rRNA
Nearby chains
- Chain C
- uL4
- Chain P
- uL22
- Chain e
- eL32
Coloring options: