IL_8VVV_020

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCG*UC

Length

5 nucleotides

Bulged bases

8VVV|1|5|C|449

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVV_020 not in the Motif Atlas

Geometric match to IL_8GLP_083

Geometric discrepancy: 0.3725

The information below is about IL_8GLP_083

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

72

Unit IDs

8VVV|1|5|G|448
8VVV|1|5|C|449
8VVV|1|5|G|450
*
8VVV|1|5|U|1303
8VVV|1|5|C|1304

Current chains

Chain 5

28S rRNA

Nearby chains

Chain e

eL32

Chain f

eL33