IL_8VVV_022

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAG*CAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVV_022 not in the Motif Atlas

Geometric match to IL_8CRE_045

Geometric discrepancy: 0.179

The information below is about IL_8CRE_045

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

8VVV|1|5|G|462
8VVV|1|5|A|463
8VVV|1|5|G|464
*
8VVV|1|5|C|692
8VVV|1|5|A|693
8VVV|1|5|C|694

Current chains

Chain 5

28S rRNA

Nearby chains

Chain E

L6

Chain r

eL28