IL_8VVV_036

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCCG*CCCG

Length

8 nucleotides

Bulged bases

8VVV|1|5|C|739, 8VVV|1|5|C|740, 8VVV|1|5|C|928, 8VVV|1|5|C|929

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVV_036 not in the Motif Atlas

Geometric match to IL_5J7L_341

Geometric discrepancy: 0.2297

The information below is about IL_5J7L_341

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

8VVV|1|5|C|738
8VVV|1|5|C|739
8VVV|1|5|C|740
8VVV|1|5|G|741
*
8VVV|1|5|C|927
8VVV|1|5|C|928
8VVV|1|5|C|929
8VVV|1|5|G|930

Current chains

Chain 5

28S rRNA

Nearby chains

Chain M

eL14