IL_8VVV_040

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUC*GCCCG

Length

8 nucleotides

Bulged bases

8VVV|1|5|C|1220, 8VVV|1|5|C|1221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVV_040 not in the Motif Atlas

Geometric match to IL_7A0S_030

Geometric discrepancy: 0.3367

The information below is about IL_7A0S_030

Detailed Annotation

Isolated near basepair

Broad Annotation

Isolated near basepair

Motif group

IL_42997.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

23

Unit IDs

8VVV|1|5|C|1088
8VVV|1|5|U|1089
8VVV|1|5|C|1090
*
8VVV|1|5|G|1219
8VVV|1|5|C|1220
8VVV|1|5|C|1221
8VVV|1|5|C|1222
8VVV|1|5|G|1223

Current chains

Chain 5

28S rRNA

Nearby chains

Chain F

uL30

Chain b

eL29