IL_8VVV_046

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GG*CGCC

Length

6 nucleotides

Bulged bases

8VVV|1|5|C|1384

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVV_046 not in the Motif Atlas

Geometric match to IL_4V9F_090

Geometric discrepancy: 0.28

The information below is about IL_4V9F_090

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_73464.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

8VVV|1|5|G|1366
8VVV|1|5|G|1367
*
8VVV|1|5|C|1382
8VVV|1|5|G|1383
8VVV|1|5|C|1384
8VVV|1|5|C|1385

Current chains

Chain 5

28S rRNA

Nearby chains

Chain C

uL4

Chain L

eL13

Chain N

eL15