IL_8VVV_049

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

8VVV|1|5|A|1503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVV_049 not in the Motif Atlas

Geometric match to IL_8CRE_026

Geometric discrepancy: 0.0776

The information below is about IL_8CRE_026

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

8VVV|1|5|C|1473
8VVV|1|5|C|1474
*
8VVV|1|5|G|1502
8VVV|1|5|A|1503
8VVV|1|5|G|1504

Current chains

Chain 5

28S rRNA

Nearby chains

Chain Q

eL18

Chain a

uL15

Chain b

eL29