IL_8VVV_055

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGUC*(7MG)UC

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 7MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVV_055 not in the Motif Atlas

Geometric match to IL_8CRE_034

Geometric discrepancy: 0.1458

The information below is about IL_8CRE_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

8VVV|1|5|G|1592
8VVV|1|5|G|1593
8VVV|1|5|U|1594
8VVV|1|5|C|1595
*
8VVV|1|5|7MG|1611
8VVV|1|5|U|1612
8VVV|1|5|C|1613

Current chains

Chain 5

28S rRNA

Nearby chains

Chain j

eL37