IL_8VVV_056

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

8VVV|1|5|U|1597

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVV_056 not in the Motif Atlas

Geometric match to IL_8P9A_260

Geometric discrepancy: 0.109

The information below is about IL_8P9A_260

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

8VVV|1|5|C|1596
8VVV|1|5|U|1597
8VVV|1|5|G|1598
*
8VVV|1|5|C|1609
8VVV|1|5|G|1610

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain j

eL37