IL_8VVV_058

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUU*A(PSU)A

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVV_058 not in the Motif Atlas

Geometric match to IL_8CRE_037

Geometric discrepancy: 0.092

The information below is about IL_8CRE_037

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

8VVV|1|5|U|1677
8VVV|1|5|U|1678
8VVV|1|5|U|1679
*
8VVV|1|5|A|1688
8VVV|1|5|PSU|1689
8VVV|1|5|A|1690

Current chains

Chain 5

28S rRNA

Nearby chains

Chain L

eL13

Chain Q

eL18

Chain T

eL21

Chain a

uL15

Chain b

eL29