IL_8VVV_061

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGU*AU

Length

5 nucleotides

Bulged bases

8VVV|1|5|G|1730

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVV_061 not in the Motif Atlas

Geometric match to IL_8CRE_040

Geometric discrepancy: 0.1152

The information below is about IL_8CRE_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_00225.14

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

8VVV|1|5|A|1729
8VVV|1|5|G|1730
8VVV|1|5|U|1731
*
8VVV|1|5|A|1844
8VVV|1|5|U|1845

Current chains

Chain 5

28S rRNA

Nearby chains

Chain F

uL30

Chain Q

eL18

Chain T

eL21

Chain b

eL29