IL_8VVV_066

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGA*UAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVV_066 not in the Motif Atlas

Geometric match to IL_8P9A_270

Geometric discrepancy: 0.1227

The information below is about IL_8P9A_270

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

8VVV|1|5|A|1755
8VVV|1|5|G|1756
8VVV|1|5|A|1757
*
8VVV|1|5|U|1785
8VVV|1|5|A|1786
8VVV|1|5|U|1787

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 7

5S ribosomal RNA; 5S rRNA

Chain D

uL18

Chain I

L10