IL_8VVV_075
3D structure
- PDB id
- 8VVV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian ribosomes bound to Anisomycin in the nonrotated conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUCAUCAG*CUGGAG
- Length
- 14 nucleotides
- Bulged bases
- 8VVV|1|5|U|1936, 8VVV|1|5|C|1937, 8VVV|1|5|G|2061, 8VVV|1|5|A|2063
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VVV_075 not in the Motif Atlas
- Geometric match to IL_8CRE_054
- Geometric discrepancy: 0.1994
- The information below is about IL_8CRE_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_77278.1
- Basepair signature
- cWW-tWW-L-tWW-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8VVV|1|5|C|1932
8VVV|1|5|U|1933
8VVV|1|5|C|1934
8VVV|1|5|A|1935
8VVV|1|5|U|1936
8VVV|1|5|C|1937
8VVV|1|5|A|1938
8VVV|1|5|G|1939
*
8VVV|1|5|C|2059
8VVV|1|5|U|2060
8VVV|1|5|G|2061
8VVV|1|5|G|2062
8VVV|1|5|A|2063
8VVV|1|5|G|2064
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain H
- uL6
- Chain M
- eL14
- Chain O
- uL13
- Chain S
- eL20
- Chain m
- eL40
Coloring options: