IL_8VVV_086

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUAGU(A2M)(OMG)*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVV_086 not in the Motif Atlas

Geometric match to IL_8CRE_065

Geometric discrepancy: 0.092

The information below is about IL_8CRE_065

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

8VVV|1|5|G|2364
8VVV|1|5|U|2365
8VVV|1|5|A|2366
8VVV|1|5|G|2367
8VVV|1|5|U|2368
8VVV|1|5|A2M|2369
8VVV|1|5|OMG|2370
*
8VVV|1|5|C|3864
8VVV|1|5|G|3865
8VVV|1|5|A|3866
8VVV|1|5|A|3867
8VVV|1|5|A|3868
8VVV|1|5|C|3869

Current chains

Chain 5

28S rRNA

Nearby chains

Chain C

uL4

Chain P

uL22