IL_8VVV_092

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAUC*GG(B9B)AG

Length

10 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: B9B

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VVV_092 not in the Motif Atlas

Geometric match to IL_8P9A_295

Geometric discrepancy: 0.2289

The information below is about IL_8P9A_295

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

24

Unit IDs

8VVV|1|5|C|2595
8VVV|1|5|G|2596
8VVV|1|5|A|2597
8VVV|1|5|U|2598
8VVV|1|5|C|2599
*
8VVV|1|5|G|2758
8VVV|1|5|G|2759
8VVV|1|5|B9B|2760
8VVV|1|5|A|2761
8VVV|1|5|G|2762

Current chains

Chain 5

28S rRNA

Nearby chains

Chain A

uL2

Chain Z

L27

Chain g

eL34