IL_8VVV_097
3D structure
- PDB id
- 8VVV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian ribosomes bound to Anisomycin in the nonrotated conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UGGAAUG*CGAGAGA
- Length
- 14 nucleotides
- Bulged bases
- 8VVV|1|5|U|2667, 8VVV|1|5|A|2680
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VVV_097 not in the Motif Atlas
- Geometric match to IL_8P9A_301
- Geometric discrepancy: 0.1861
- The information below is about IL_8P9A_301
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_93476.1
- Basepair signature
- cWW-tSH-L-R-tSS-tHS-L-R-cWW
- Number of instances in this motif group
- 6
Unit IDs
8VVV|1|5|U|2662
8VVV|1|5|G|2663
8VVV|1|5|G|2664
8VVV|1|5|A|2665
8VVV|1|5|A|2666
8VVV|1|5|U|2667
8VVV|1|5|G|2668
*
8VVV|1|5|C|2678
8VVV|1|5|G|2679
8VVV|1|5|A|2680
8VVV|1|5|G|2681
8VVV|1|5|A|2682
8VVV|1|5|G|2683
8VVV|1|5|A|2684
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain NN
- uS15
- Chain R
- eL19
- Chain Z
- L27
- Chain c
- eL30
- Chain g
- eL34
- Chain p
- eL43
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